I have an upgrade option showing in users profile I need to remove

I used to use the free version with paypal and upgraded to pro so I could use stripe instead, that works fine but if I set up a new user they have 2 unwanted otpions in their profile (I am also using Buddypress),

No 1 is an upgrade option: Update from Starter Kit to PRO level and a paypal logo
No 2 is a cancel all options button and a paypal button.

I need to get rid of these as I do not want any paypal references on my site. the cancel all options button should show stripe if it shows anything the upgrade is redundent as I only have one member level Level 1.

I have have no members that signed up with paypal as I was just testing, I have tried a fresh install with plugin deletion protection set to no (but it still saved some old data)

There are no upgrade or cancel options in the default profile shown by [s2member-profile /]. It sounds to me like you are talking about a custom profile page you have created. Check that page for those errant s2Member shortcodes.